Plants
Set of tutorials from various topics that use plant datasets for analysis
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Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Chloroplast genome assembly | |||||
ERGA post-assembly QC | |||||
Large genome assembly and polishing |
Genome Annotation
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
From small to large-scale genome comparison |
Microbiome
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
16S Microbial analysis with Nanopore data |
Sequence analysis
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
NCBI BLAST+ against the MAdLand |
Single Cell
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Whole transcriptome analysis of Arabidopsis thaliana |
Editorial Board
This material is reviewed by our Editorial Board:
Deepti Varshney Saskia HiltemannContributors
This material was contributed to by:
Tom Brown Delphine Lariviere Beatriz Serrano-Solano Cristóbal Gallardo Mehmet Tekman Pavankumar Videm Deepti Varshney Esteban Perez-Wohlfeil Anna Syme Fabian RecktenwaldFunding
These individuals or organisations provided funding support for the development of this resource