Pratik Jagtap

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Proteomics

Tutorials

• Proteomics / Proteogenomics 1: Database Creation ✍️
• Proteomics / Neoantigen 2: Database merge and FragPipe discovery 📝 🧐
• Proteomics / Clinical Metaproteomics 1: Database-Generation 📝 🧐
• Proteomics / Neoantigen 5b: IEDB binding Validated Neopeptides 📝 🧐
• Proteomics / Metaproteomics tutorial ✍️
• Proteomics / Neoantigen 4: Variant Annotation 📝 🧐
• Proteomics / metaQuantome 3: Taxonomy ✍️
• Proteomics / metaQuantome 1: Data creation ✍️
• Proteomics / Neoantigen 1a: Fusion-Database-Generation 📝 🧐
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation 📝 🧐
• Proteomics / metaQuantome 2: Function ✍️
• Proteomics / Proteogenomics 3: Novel peptide analysis ✍️
• Proteomics / EncyclopeDIA ✍️
• Proteomics / Clinical Metaproteomics 2: Discovery 📝
• Proteomics / Clinical Metaproteomics 4: Quantitation 📝
• Proteomics / Neoantigen 3: PepQuery2 Verification 📝 🧐
• Proteomics / Proteogenomics 2: Database Search ✍️
• Proteomics / Neoantigen 5a: Predicting HLA Binding 📝 🧐
• Proteomics / Clinical Metaproteomics 5: Data Interpretation 📝
• Proteomics / Clinical Metaproteomics 3: Verification 📝
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data ✍️

Slides

• Microbiome / Introduction to metatranscriptomics ✍️

Video Recordings

• Proteomics / Metaproteomics tutorial 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 🗣

Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

External Links

Favourite Topics

Favourite Formats