Morgan Howells

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Single Cell

Tutorials

• Single Cell / Evaluating Reference Data for Bulk RNA Deconvolution ✍️ 🧐
• Single Cell / Understanding Barcodes 📝 🧐
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) ✍️
• Single Cell / Bulk RNA Deconvolution with MuSiC 📝
• Single Cell / Converting between common single cell data formats ✍️
• Single Cell / Converting NCBI Data to the AnnData Format ✍️ 🧐
• Single Cell / Comparing inferred cell compositions using MuSiC deconvolution 🧐
• Introduction to Galaxy Analyses / A short introduction to Galaxy 🧐

Slides

• Single Cell / Automated Cell Annotation ✍️
• Single Cell / Single-cell Formats and Resources ✍️ 🧐

FAQs

• Importing data from Sierra LIMS
• Notebook-based tutorials can give different outputs

Video Recordings

• Single Cell / Single-cell Formats and Resources 💬 🗣
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) 💬 🗣
• Single Cell / Importing files from public atlases 🗣
• Single Cell / Converting NCBI Data to the AnnData Format 🗣

Events

• 2024 Bioinformatics Bootcamp - The Open University 🧑‍🏫

GitHub Activity

github Issues Reported

15 Merged Pull Requests

See all of the github Pull Requests and github Commits by Morgan Howells.

• Importing From Public atlas - Tool Updates
  single-cell
  Spocathon-HDR-ELIXIR
• Update contributors
  single-cell
  Spocathon-HDR-ELIXIR
• Understanding Barcodes: Update workflows/tools
  single-cell
  Spocathon-HDR-ELIXIR
• Scrna Pre-Processing 10x - tool updates
  single-cell
  Spocathon-HDR-ELIXIR
• New Evaluating Reference Data for Bulk RNA Deconvolution tutorial
  template-and-tools
  new tutorial
  single-cell

Reviewed 5 PRs

We love our community reviewing each other's work!

• Understanding Barcodes: Update workflows/tools
  single-cell
  Spocathon-HDR-ELIXIR
• Adding instructions to register
  introduction
  spoc-cofest
  Spocathon-HDR-ELIXIR
• New Evaluating Reference Data for Bulk RNA Deconvolution tutorial
  template-and-tools
  new tutorial
  single-cell
• New single-cell formats and sources slide deck
  single-cell
• New NCBI to AnnData tutorial
  template-and-tools
  single-cell

News

External Links

Favourite Topics

Favourite Formats