Linelle Abueg

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data ✍️ 🧐
• Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step ✍️ 🧐
• Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
• Transcriptomics / Pathway analysis with the MINERVA Platform 🧐
• Variant Analysis / M. tuberculosis Variant Analysis 🧐

FAQs

• Import workflows from WorkflowHub

Video Recordings

• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data 💬 🗣

GitHub Activity

github Issues Reported

16 Merged Pull Requests

See all of the github Pull Requests and github Commits by Linelle Abueg.

• VGP longform tutorial edits
  template-and-tools
  assembly
• VGP short (workflow) tutorial edits
  assembly
• added wkflw run snippets to VGP wkflw tutorial
  variant-analysis
  transcriptomics
  template-and-tools
  assembly
  contributing
• vgp assembly: flowcharts for meryl and purge_dups
  assembly
• [VGP assembly] clarifying text in scaffolding tooltip
  assembly

Reviewed 6 PRs

We love our community reviewing each other's work!

• github [Google Form] New Recording Submission for Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
  assembly
• added wkflw run snippets to VGP wkflw tutorial
  variant-analysis
  transcriptomics
  template-and-tools
  assembly
  contributing
• vgp assembly: flowcharts for meryl and purge_dups
  assembly
• VGP assembly tutorials: add glossary, add abbreviations to wkflw training, CYOA for contigging
  assembly
• `VGP assembly pipeline`: some textual changes
  assembly

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