My Training Event Title

Virtual course

warning Warning: This page is currently under construction, the program and descriptions may still change. Please check back later for the finalized information.

Short description of the event (one or two sentences). A longer description can be placed at the bottom of this document.

Longer description of the course. This will be added to the overview page of your course.

You can add anything you like here, text, images, tables.

All in markdown format.

Who is this course for?

This event is intended for PhD students interested in Genomics. A basic knowledge in R is useful but not required.

Event Location

Geocoding via Nominatim, Map data from OpenStreetMap

Organisers & Instructors

This event is brought to you by:

Organisers(s) orcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHelena Rasche avatar Helena Rasche
Instructor(s) orcid logoBérénice Batut avatar Bérénice Batutorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulos

Before you start

Before starting the course, make sure to follow the setup instructions

Monday: Introduction

Short description of the program in this section. Markdown formatted

Time Lesson Slides Hands-on Recordings

09:00 - 10:00

A short introduction to Galaxy

10:45 - 12:00

Data Manipulation Olympics

10:30

Coffee Break

10:45 - 12:00

Data Manipulation Olympics

13:00

Galaxy Installation with Ansible

16:00 - 17:00

Custom Session

Description of the custom session here, in markdown, can add links if needed

17:00 - 18:00

Wrap-up & Drinks

Time for some well-deserved drinks and socializing!

Tuesday: An advanced look at ..

Short description of the program for this section.

Track 1

you can further subdivide into multiple subsections/tracks as well

Time Lesson Slides Hands-on Recordings

09:00 - 10:00

A short introduction to Galaxy

Wrap-up

Track 2

blabla

Time Lesson Slides Hands-on Recordings
16S Microbial Analysis with mothur (short)

Wednesday: Track buttons example

Today we have two different tracks, click on one of the buttons below to view the track program.

Track 1 Track 2 Ecology Climate Plants CYOA Track 7

Get set up for the course!

Follow the steps below to get set up with everything you need to participate in the course!

Galaxy logo
Create a Galaxy Account

Create an account on one of the following Galaxy servers:

You will get an email with activation link. It may end up in your junk folder.

Note: If you already have a Galaxy account you can skip this step and just log in to your existing account.

cartoon of a person standing in front of a blackboard
Join Galaxy Training Group (TIaaS)

Join TIaaS by clicking on the link below matching your Galaxy server:

This will give your analysis jobs priority on Galaxy for the duration of the event. Make sure you are logged in before clicking the link. You should see a green message box if all went well.

cartoon of a person leaning against a laptop
Join Slack!

We will provide support via Slack. Here you can ask any questions you may have during the course, and socialize with your fellow participants and instructors. The following steps will get you set up with Slack:

  1. Join Slack via this Invite Link
  2. Join the event channel: #my-event
  3. Introduce yourself here!

Galaxy logo
Prepare for the Course

Before joining the course, please make sure to:

  • Bring a laptop with at least 8GB of RAM.
  • Do the Intro to Galaxy tutorial if you are not yet familiar with Galaxy

Instructor Zone

Check out our checklists for

Request TIaaS

Training Infrastructure as a Service (TIaaS) is a service that allows you to request space for your course on a server, it helps ensure courses run smoothly by separating your trainee's jobs into a separate queue. Learn more about TIaaS in our tutorial.

The following links will open a (mostly) pre-filled out TIaaS form, if that server supports TIaaS. Otherwise you might see "page not found".

Once you receive a URL from the admins, please set it as a tiaas_link in your event metadata.

Add your event to the Galaxy Hub Event Horizon

To also list your event on the Galaxy Event Horizon, copy the text below, and add your event to the Galaxy Hub GitHub Repo. Create a folder for your event here, and add an index.md file with the following contents:

---
title: "My Training Event Title"
date: '1970-04-01'
days: 2
tease: Short description of the event (one or two sentences).
A longer description can be placed at the bottom of this document.

#continent: EU
location: "Erasmus Medical Center,Rotterdam"
external_url: "https://training.galaxyproject.org/training-material/events/2024-04-01-example-event.html"
gtn: true
contact: "organisers@example.com"
subsites: [all]
---

Promote the Event

Tootable/Tweetable version:


My Training Event Title! 📢

Short description of the event (one or two sentences).
A longer description can be placed at the bottom of this document.


📅 April 1 – 2, 1970
➡️ https://gxy.io/GTN:E00001
📝 Registration is open until 2024-01-01! https://example.org

Slack-compatible version:


My Training Event Title! 📢

Short description of the event (one or two sentences).
A longer description can be placed at the bottom of this document.


:calendar: April 1 – 2, 1970
:arrow_right: https://gxy.io/GTN:E00001
:pencil: Registration is open until 2024-01-01! https://example.org

Version with schedule:


My Training Event Title! 📢

Short description of the event (one or two sentences).
A longer description can be placed at the bottom of this document.


**Agenda**:
- Monday: Introduction
- Tuesday: An advanced look at ..
- Wednesday: Track buttons example

📅 April 1 – 2, 1970
➡️ https://gxy.io/GTN:E00001
📝 Registration is open until 2024-01-01! https://example.org

event logo Event is Over
Event details
event-dateApril 1 – 2, 1970
event-locationErasmus Medical Center, Dr. Molewaterplein 40, Rotterdam, The Netherlands, 3015 GD
event-costfree
emailorganisers@example.com

Add this event to your calendar Google Outlook Office 365
Organisers
Saskia Hiltemann avatar Saskia Hiltemann Helena Rasche avatar Helena Rasche

Instructors
Bérénice Batut avatar Bérénice Batut Fotis E. Psomopoulos avatar Fotis E. Psomopoulos
In collaboration with
Gallantries: Bridging Training Communities in Life Science, Environment and Health avatar Gallantries