Cutadapt: Remove adapter sequences from FASTQ/FASTA

toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1

Metadata

Links

bio.tools: Cutadapt

EDAM Operations

Sequence editing

EDAM Topics

Probes and primers

Observed Tool Versions

Within GTN tutorials

4.9+galaxy1

4.8+galaxy0

4.4+galaxy0

4.0+galaxy1

4.0+galaxy0

3.7+galaxy0

3.5+galaxy2

3.5+galaxy0

3.4+galaxy2

3.4+galaxy1

1.16.5

1.16.3

Relevant Tutorials

Assembly / Assembly of metagenomic sequencing data
Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
Contributing to the Galaxy Training Material / Creating a new tutorial
Ecology / Data submission using ENA upload Tool
Epigenetics / ATAC-Seq data analysis
Epigenetics / CUT&RUN data analysis
Genome Annotation / CRISPR screen analysis
Genome Annotation / Essential genes detection with Transposon insertion sequencing
Microbiome / Assembly of metagenomic sequencing data
Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
Sequence analysis / Quality Control
Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
Transcriptomics / Pathway analysis with the MINERVA Platform
Transcriptomics / Reference-based RNA-Seq data analysis
Transcriptomics / RNA-RNA interactome data analysis
Transcriptomics / 1: RNA-Seq reads to counts