seqtk_subseq: extract subsequences from FASTA/Q files

Metadata

Links

• bio.tools: seqtk

EDAM Operations

• Sequence file editing
• Data handling

EDAM Topics

• Biological databases

Observed Tool Versions

Within GTN tutorials

1.4+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• MISSISSIPPI

1.3.1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@AuBi
• GalaxyTrakr
• UseGalaxy.be
• UseGalaxy.cz
• UseGalaxy.no
• Viral Variant Visualizer (VVV)

Relevant Tutorials

• Assembly / Assembly of metagenomic sequencing data
• Contributing to the Galaxy Training Material / Creating a new tutorial
• Microbiome / Assembly of metagenomic sequencing data
• Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data
• Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data