Samtools stats: generate statistics for BAM dataset

toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.5

Metadata

Links

bio.tools: SAMtools

EDAM Operations

EDAM Topics

Observed Tool Versions

Within GTN tutorials

2.0.5

2.0.4

2.0.2+galaxy2

2.0.1

Relevant Tutorials

Assembly / ERGA post-assembly QC
Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
Introduction to Galaxy Analyses / NGS data logistics
Sequence analysis / Mapping
Single Cell / Pre-processing of Single-Cell RNA Data
Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
Variant Analysis / M. tuberculosis Variant Analysis