Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Marie Josse avatar Marie Josseorcid logoWendi Bacon avatar Wendi Baconorcid logoCameron Hyde avatar Cameron HydeGildas Le Corguillé avatar Gildas Le Corguilléorcid logoNate Coraor avatar Nate Coraororcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoMartin Čech avatar Martin Čechorcid logoPaul Zierep avatar Paul ZierepSimon Bray avatar Simon BrayHervé Ménager avatar Hervé Ménagerorcid logoSaskia Hiltemann avatar Saskia HiltemannDannon Baker avatar Dannon BakerDenys Savchenko avatar Denys Savchenkoorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn GrüningErik Schill avatar Erik SchillLoraine Guéguen avatar Loraine GuéguenCyril Monjeaud avatar Cyril MonjeaudRoss Lazarus avatar Ross LazarusLain Pavot avatar Lain Pavotorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruAssunta DeSanto avatar Assunta DeSantoClare Sloggett avatar Clare Sloggettorcid logoAndrei Variu avatar Andrei VariuNitesh Turaga avatar Nitesh Turagaorcid logoArmin Dadras avatar Armin DadrasNiall Beard avatar Niall BeardEstelle Ancelet avatar Estelle Anceletorcid logoBérénice Batut avatar Bérénice BatutAysam Guerler avatar Aysam GuerlerWilliam Durand avatar William DurandStéphanie Legras avatar Stéphanie LegrasMatthias Bernt avatar Matthias Berntorcid logoNicola Soranzo avatar Nicola SoranzoDave B. avatar Dave B.orcid logoJohn Davis avatar John Davisorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoJohn Chilton avatar John Chiltonorcid logoYvan Le Bras avatar Yvan Le BrasYouri Hoogstrate avatar Youri Hoogstrateorcid logoClemens Blank avatar Clemens Blankorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource