Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

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Contributors

This material was contributed to by:

Aysam Guerler avatar Aysam GuerlerGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBjörn Grüning avatar Björn GrüningMatthias Bernt avatar Matthias BerntHervé Ménager avatar Hervé Ménagerorcid logoWendi Bacon avatar Wendi Baconorcid logoArmin Dadras avatar Armin DadrasClare Sloggett avatar Clare Sloggettorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruNitesh Turaga avatar Nitesh Turagaorcid logoBérénice Batut avatar Bérénice BatutStéphanie Legras avatar Stéphanie LegrasLoraine Guéguen avatar Loraine GuéguenDenys Savchenko avatar Denys Savchenkoorcid logoJohn Davis avatar John Davisorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoHelena Rasche avatar Helena RascheYouri Hoogstrate avatar Youri HoogstrateEstelle Ancelet avatar Estelle Anceletorcid logoMartin Čech avatar Martin Čechorcid logoCameron Hyde avatar Cameron HydeRoss Lazarus avatar Ross Lazarusorcid logoJohn Chilton avatar John Chiltonorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoPaul Zierep avatar Paul ZierepCyril Monjeaud avatar Cyril Monjeaudorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoCristóbal Gallardo avatar Cristóbal GallardoNiall Beard avatar Niall BeardAssunta DeSanto avatar Assunta DeSantoWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoJohan Gustafsson avatar Johan GustafssonDannon Baker avatar Dannon Bakerorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoNate Coraor avatar Nate CoraorErik Schill avatar Erik SchillSimon Bray avatar Simon Brayorcid logoClemens Blank avatar Clemens Blankorcid logoAndrei Variu avatar Andrei VariuMarie Josse avatar Marie JosseLain Pavot avatar Lain PavotDave B. avatar Dave B.

Funding

These individuals or organisations provided funding support for the development of this resource