Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

Matthias Bernt avatar Matthias BerntClare Sloggett avatar Clare SloggettEstelle Ancelet avatar Estelle AnceletRoss Lazarus avatar Ross LazarusAssunta DeSanto avatar Assunta DeSantoorcid logoJohan Gustafsson avatar Johan GustafssonCyril Monjeaud avatar Cyril MonjeaudGildas Le Corguillé avatar Gildas Le CorguilléStéphanie Legras avatar Stéphanie Legrasorcid logoMartin Čech avatar Martin Čechorcid logoWendi Bacon avatar Wendi Baconorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoNicola Soranzo avatar Nicola SoranzoErik Schill avatar Erik Schillorcid logoJohn Davis avatar John Davisorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoArmin Dadras avatar Armin Dadrasorcid logoNate Coraor avatar Nate Coraororcid logoHelena Rasche avatar Helena Rascheorcid logoCameron Hyde avatar Cameron HydeHervé Ménager avatar Hervé MénagerWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia HiltemannAysam Guerler avatar Aysam GuerlerMarie Josse avatar Marie Josseorcid logoBérénice Batut avatar Bérénice BatutDave B. avatar Dave B.orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoAlex Ostrovsky avatar Alex OstrovskyLain Pavot avatar Lain PavotNiall Beard avatar Niall BeardDannon Baker avatar Dannon BakerNitesh Turaga avatar Nitesh Turagaorcid logoJohn Chilton avatar John ChiltonSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal GallardoLoraine Guéguen avatar Loraine Guéguenorcid logoClemens Blank avatar Clemens BlankYouri Hoogstrate avatar Youri Hoogstrateorcid logoPaul Zierep avatar Paul Ziereporcid logoBjörn Grüning avatar Björn Grüning

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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UFR
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.