Workflows

These workflows are associated with Quality Control

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

GTN - Sequence Analyses - Quality Control (imported from uploaded file)

Last updated Apr 21, 2021

Launch in Tutorial Mode
License: None Specified, defaults to CC-BY-4.0
Tests: ✅ Results:

Download Galaxy Workflow.ga Galaxy Main Galaxy Europe Galaxy France Galaxy Australia Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\nreads_2"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nreads_1"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["FastQC"];
  0 -->|output| 2;
  1f4fad7b-11e7-4ec5-b73d-835080c47e70["Output\nreads_2_fastqc"];
  2 --> 1f4fad7b-11e7-4ec5-b73d-835080c47e70;
  style 1f4fad7b-11e7-4ec5-b73d-835080c47e70 stroke:#2c3143,stroke-width:4px;
  3["Cutadapt"];
  1 -->|output| 3;
  12a1bc96-cfdd-4ed8-b062-433833e09aee["Output\nreads_1_cutadapt"];
  3 --> 12a1bc96-cfdd-4ed8-b062-433833e09aee;
  style 12a1bc96-cfdd-4ed8-b062-433833e09aee stroke:#2c3143,stroke-width:4px;
  4["FastQC"];
  1 -->|output| 4;
  12e19f0b-102a-4470-9bc8-e362bb4e2c91["Output\nreads_1_fastqc"];
  4 --> 12e19f0b-102a-4470-9bc8-e362bb4e2c91;
  style 12e19f0b-102a-4470-9bc8-e362bb4e2c91 stroke:#2c3143,stroke-width:4px;
  5["Cutadapt"];
  1 -->|output| 5;
  0 -->|output| 5;
  b7c138cc-10d0-4bd0-b960-a3b5e60f29cd["Output\nreads_cutadapt"];
  5 --> b7c138cc-10d0-4bd0-b960-a3b5e60f29cd;
  style b7c138cc-10d0-4bd0-b960-a3b5e60f29cd stroke:#2c3143,stroke-width:4px;
  6["MultiQC"];
  4 -->|text_file| 6;
  2 -->|text_file| 6;
  fa7f541d-b9be-4283-afa1-8398d89f345e["Output\nmultiqc"];
  6 --> fa7f541d-b9be-4283-afa1-8398d89f345e;
  style fa7f541d-b9be-4283-afa1-8398d89f345e stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL