Katherine Do

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Proteomics / Clinical Metaproteomics 3: Verification ✍️
• Proteomics / Clinical Metaproteomics 1: Database-Generation ✍️
• Proteomics / Neoantigen 4: Variant Annotation ✍️ 🧐
• Proteomics / Clinical Metaproteomics 2: Discovery ✍️
• Proteomics / Clinical Metaproteomics 4: Quantitation ✍️
• Proteomics / Neoantigen 1a: Fusion-Database-Generation ✍️ 🧐
• Proteomics / Neoantigen 3: PepQuery2 Verification ✍️ 🧐
• Proteomics / Neoantigen 2: Database merge and FragPipe discovery ✍️ 🧐
• Proteomics / Neoantigen 5b: IEDB binding Validated Neopeptides ✍️ 🧐
• Proteomics / Clinical Metaproteomics 5: Data Interpretation ✍️
• Proteomics / Neoantigen 5a: Predicting HLA Binding ✍️ 🧐
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation ✍️ 🧐

FAQs

• Running a workflow

Video Recordings

• Proteomics / Clinical Metaproteomics 3: Verification 💬 🗣
• Proteomics / Clinical Metaproteomics 1: Database-Generation 💬 🗣
• Proteomics / Clinical Metaproteomics 2: Discovery 💬 🗣
• Proteomics / Clinical Metaproteomics 4: Quantitation 💬 🗣
• Proteomics / Clinical Metaproteomics 5: Data Interpretation 💬 🗣

GitHub Activity

github Issues Reported

12 Merged Pull Requests

See all of the github Pull Requests and github Commits by Katherine Do.

• Revise tool parameters and add workflow disclaimer
  proteomics
• Enhance tutorial with peptide annotation and queries
  proteomics
  faqs
• Refine neoantigen tutorial content and structure
  proteomics
• Enhance tutorial with genomic and variant annotation details
  proteomics
• Update neoantigen tutorials
  proteomics

Reviewed 1 PRs

We love our community reviewing each other's work!

• Editing names in proteomics folder
  template-and-tools
  proteomics

External Links

Favourite Topics

Favourite Formats