James Johnson

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Proteomics / Neoantigen 3: PepQuery2 Verification ✍️
• Proteomics / Proteogenomics 3: Novel peptide analysis ✍️
• Proteomics / Neoantigen 5a: Predicting HLA Binding ✍️
• Proteomics / EncyclopeDIA ✍️
• Proteomics / Metaproteomics tutorial ✍️
• Proteomics / Proteogenomics 2: Database Search ✍️
• Proteomics / Neoantigen 1a: Fusion-Database-Generation ✍️
• Proteomics / Neoantigen 2: Database merge and FragPipe discovery ✍️
• Proteomics / Neoantigen 4: Variant Annotation ✍️
• Proteomics / Proteogenomics 1: Database Creation ✍️ 🧐
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation ✍️
• Proteomics / Neoantigen 5b: IEDB binding Validated Neopeptides ✍️

Video Recordings

• Proteomics / Proteogenomics 1: Database Creation 🗣

GitHub Activity

github Issues Reported

2 Merged Pull Requests

See all of the github Pull Requests and github Commits by James Johnson.

• Update topics/proteomics/tutorials/proteogenomics-dbcreation/tutorial.md
• Update Proteogenomics1 Database Creation

Reviewed 1 PRs

We love our community reviewing each other's work!

• Proteomics dbcreation tutorial small fixes and clarifications

External Links

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