James Johnson

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

13 Tutorials

• Proteomics / Proteogenomics 3: Novel peptide analysis ✍️
• Proteomics / Neoantigen 1a: Fusion-Database-Generation ✍️
• Proteomics / Neoantigen 1b: Non-Reference-Database-Generation ✍️
• Proteomics / Proteogenomics 1: Database Creation ✍️ 🧐
• Proteomics / Neoantigen 3: PepQuery2 Verification ✍️
• Proteomics / Neoantigen 5b: IEDB binding Validated Neopeptides ✍️
• Proteomics / Neoantigen 5a: Predicting HLA Binding ✍️
• Proteomics / Neoantigen 4: Variant Annotation ✍️
• Proteomics / Neoantigen 2: Database merge and FragPipe discovery ✍️
• Proteomics / Proteogenomics 2: Database Search ✍️
• Proteomics / EncyclopeDIA ✍️
• Proteomics / Metaproteomics tutorial ✍️

1 Video Recording

• Proteomics / Proteogenomics 1: Database Creation 🗣

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GitHub Activity

github Issues Reported

2 Merged Pull Requests

See all of the github Pull Requests and github Commits by James Johnson.

• Update topics/proteomics/tutorials/proteogenomics-dbcreation/tutorial.md
• Update Proteogenomics1 Database Creation

Reviewed 1 PRs

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• Proteomics dbcreation tutorial small fixes and clarifications

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