Proteomics
Learn all about proteomics and how to analyze data in Galaxy
| Organisers(s) |
 
Pratik Jagtap
Melanie Föll
Subina Mehta
Timothy J. Griffin
|
| Instructor(s) |
Pratik Jagtap
Melanie Föll
Subina Mehta
Timothy J. Griffin
|
Introduction
If you encounter any issue please ask us in this Slack channel.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Introduction to proteomics, protein identification, quantification and statistical modelling
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| MaxQuant and MSstats for the analysis of label-free data |
Advanced analysis
If you encounter any issue please ask us in this Slack channel.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| EncyclopeDIA | |||
| Proteogenomics 1: Database Creation | |||
| Proteogenomics 3: Novel peptide analysis | |||
| Metaproteomics tutorial |
Clinical Metaproteomics
This learning path aims to teach you the basics of how to perform metaproteomics analysis of the clinical data within the Galaxy platform. You will learn how to use Galaxy for analysis and will be guided through the most common first steps of any metaproteomics database generation to searching the database, verifying the proteins/peptides, and data analysis. If you encounter any issue please ask us in this Slack channel.
Clinical metaproteomics workflows