snippy: Snippy finds SNPs between a haploid reference genome and your NGS sequence reads.

Metadata

Links

• bio.tools: snippy

EDAM Operations

• Phylogenetic inference
• Variant calling
• Phylogenetic tree visualisation

EDAM Topics

• Model organisms
• Phylogenetics
• DNA polymorphism
• Genomics

Observed Tool Versions

Within GTN tutorials

4.6.0+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• GalaxyTrakr
• UseGalaxy.cz

3.2

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters
• Variant Analysis / Microbial Variant Calling
• Variant Analysis / M. tuberculosis Variant Analysis