Call variants: with LoFreq

Metadata

Links

• bio.tools: lofreq

EDAM Operations

• Variant calling

EDAM Topics

• Genetic variation
• Genomics

Observed Tool Versions

Within GTN tutorials

2.1.5+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• GalaxyTrakr
• UseGalaxy.no

2.1.5+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Using Galaxy and Managing your Data / Using dataset collections
• Introduction to Galaxy Analyses / NGS data logistics
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis