bcftools norm: Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows

Metadata

Links

• bio.tools: BCFtools

EDAM Operations

• Data handling
• Variant calling

EDAM Topics

• GWAS study
• DNA polymorphism
• Genetic variation
• Genotyping experiment

Observed Tool Versions

Within GTN tutorials

1.15.1+galaxy3

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.cz
• UseGalaxy.no

1.9+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
• Variant Analysis / Trio Analysis using Synthetic Datasets from RD-Connect GPAP