bcftools consensus: Create consensus sequence by applying VCF variants to a reference fasta file

Metadata

Links

• bio.tools: BCFtools

EDAM Operations

• Data handling
• Variant calling

EDAM Topics

• GWAS study
• DNA polymorphism
• Genetic variation
• Genotyping experiment

Observed Tool Versions

Within GTN tutorials

1.15.1+galaxy3

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@Pasteur
• MISSISSIPPI
• UseGalaxy.cz

1.10

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.no

1.9+galaxy2

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.be

1.9+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters
• Using Galaxy and Managing your Data / Automating Galaxy workflows using the command line
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Variant Analysis / M. tuberculosis Variant Analysis