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summary-to-cwl-template

CWL Workflow skeleton with per-step TODOs from source and design handoffs.

draft moldtarget/cwl
Related

Mold health

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  • Source layout

    Directory Mold with only index.md frontmatter.

  • Axis fields

    target-specific fields are coherent.

  • Eval plan

    eval.md not written yet.

  • Typed refs

    No typed references yet.

  • On-demand triggers

    All on-demand references describe triggers.

  • Evidence checks

    Hypothesis references include verification.

axis
target-specific
target
cwl
name
summary-to-cwl-template

Artifact handoffs

/ pipeline contract

Produces

summary-to-cwl-template

Read the original source artifact, the source summary, and all prior source-target design handoffs from the pipeline run. Emit a CWL Workflow skeleton with inputs, outputs, placeholder steps, rough connections, and TODO slots for later implementation Molds.

The interface and data-flow briefs guide the skeleton, but they do not replace source evidence. Treat the prior-step index as the working context: source summary, interface brief, data-flow brief or freeform design brief, and any open questions carried forward.

Incoming References (3)

  • freeform-summary-to-cwl-designrelated note— Translate a free-form source summary into a CWL workflow design brief.
  • NEXTFLOW → CWLphase of pipeline— Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
  • PAPER → CWLphase of pipeline— Direct path from a paper to a CWL Workflow + CommandLineTool set.