implement-cwl-tool-step
Bind one abstract step to a concrete CWL CommandLineTool using its summarize-cwl-tool summary, replacing a single placeholder in the CWL workflow draft per loop iteration.
implement-cwl-tool-step
Convert an abstract step into a concrete CWL CommandLineTool + step.
Mold health
warn- Source layout
Every file beside index.md is one the mold kind declares.
- Axis fields
target-specific fields are coherent.
- Eval plan
Abstract oracle: the properties any cast of this Mold must satisfy.
eval.md not written yet.
- Scenarios
Concrete cases bound to fixtures, run against the eval properties.
scenarios.md not written yet.
- Typed refs
No typed references yet.
- On-demand triggers
All on-demand references describe triggers.
- Evidence checks
Hypothesis references include verification.
- axis
- target-specific
- target
- cwl
- name
- implement-cwl-tool-step
Cast artifacts
- Claude skill implement-cwl-tool-step — Convert an abstract step into a concrete CWL CommandLineTool + step.
Artifact handoffs
/ pipeline contractProduces
-
CWL Workflow skeleton with one more abstract step replaced by a concrete CommandLineTool step (loop iteration output).
Consumes
-
Compact CWL tool summary from [[summarize-cwl-tool]]; binds the abstract step to a concrete CommandLineTool.
-
CWL Workflow skeleton being filled in step by step; the step replaces a placeholder in this draft.
Incoming References (2)
- NEXTFLOW → CWL phase of pipeline — Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
- PAPER → CWL phase of pipeline — Direct path from a paper to a CWL Workflow + CommandLineTool set.