nextflow-summary-to-cwl-interface

Map a Nextflow summary into a CWL Workflow interface design brief.

draft source/nextflow target/cwl

Related: summary-nextflow

Mold health

warn

Source layout
Every file beside index.md is one the mold kind declares.
Axis fields
source-specific fields are coherent.
Eval plan
Abstract oracle: the properties any cast of this Mold must satisfy.

eval.md not written yet.
Scenarios
Concrete cases bound to fixtures, run against the eval properties.

scenarios.md not written yet.
Typed refs
1 typed reference; 0 resolver issues.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

axis: source-specific
source: nextflow
name: nextflow-summary-to-cwl-interface

contract

Reference Loading

Typed references describe what casting consumes, and when the generated skill should load each artifact.

Schema summary-nextflow

Structured contract copied for validation or lookup.

Runtime Upfront Verbatim Corpus Observed

Purpose: Read source-level channel, parameter, process, and test-fixture evidence before choosing CWL Workflow inputs and outputs.

Cast artifacts

Claude skill nextflow-summary-to-cwl-interface — Map a Nextflow summary into a CWL Workflow interface design brief.

How to install →

Artifact handoffs

/ pipeline contract

Produces

nextflow-cwl-interface markdown nextflow-cwl-interface.md

Reviewable Markdown brief: CWL Workflow inputs, outputs, labels, array/record/File shapes, checkpoint outputs, source provenance.
consumed by
- nextflow-summary-to-cwl-data-flow

Consumes

summary-nextflow

Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; the source-of-truth JSON for CWL interface choices.
produced by
- summarize-nextflow

nextflow-summary-to-cwl-interface

Read a Nextflow summary and emit a reviewable Markdown interface brief for a CWL Workflow. Capture workflow inputs, workflow outputs, labels, array/record/File shapes, checkpoint outputs worth exposing for tests, source-summary provenance, confidence, and open questions.

The output is a design handoff consumed by nextflow-summary-to-cwl-data-flow, summary-to-cwl-template, and later test-plan work.

Incoming References (4)

nextflow-summary-to-cwl-data-flow related note — Translate a Nextflow summary into a CWL data-flow design brief.
summary-to-cwl-template related note — CWL Workflow skeleton with per-step TODOs from source and design handoffs.
NEXTFLOW → CWL phase of pipeline — Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
Nextflow pipeline summary related note — JSON Schema for the structured summary emitted by the summarize-nextflow Mold.