Foundry

artifact

summary-nextflow

default filename(s): summary-nextflow.json

Producers (1)

  • summarize-nextflow json · summary-nextflow.json

    A structured JSON summary of a Nextflow pipeline, including its interface, processes, data flow, software environment, and test fixtures.

Consumers (16)

  • author-galaxy-tool-wrapper

    Source pipeline summary from [[summarize-nextflow]]; provides process command, inputs, outputs, and container or conda evidence for UDT authoring.

  • find-test-data

    Source summary from [[summarize-nextflow]]; mine its test candidate set, explicit selection, and sample-data evidence when running the NEXTFLOW → GALAXY pipeline.

  • nextflow-summary-to-cwl-data-flow

    Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; consumed alongside the CWL interface brief.

  • nextflow-summary-to-cwl-interface

    Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; the source-of-truth JSON for CWL interface choices.

  • nextflow-summary-to-galaxy-data-flow

    Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; the JSON the data-flow translation reads.

  • nextflow-summary-to-galaxy-interface

    Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; the source-of-truth JSON for interface choices.

  • nextflow-summary-to-galaxy-reference-data

    Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; the source for reference-data param evidence.

  • nextflow-summary-to-galaxy-template

    Structured Nextflow pipeline summary emitted by [[summarize-nextflow]]; consulted while emitting placeholder steps.

  • nextflow-summary-to-workflow-brief

    Source evidence supplied by the preceding summarizer; preserve uncertainty and the caller’s selected scope.

  • nextflow-test-to-cwl-test-plan

    Structured Nextflow summary from [[summarize-nextflow]]; carries test_candidates, test_selection, and snapshot evidence.

  • nextflow-test-to-galaxy-test-plan

    Structured Nextflow summary from [[summarize-nextflow]]; carries test_candidates, test_selection, and snapshot evidence.

  • nextflow-to-test-data

    Structured Nextflow summary from [[summarize-nextflow]]; carries the enumerated `test_candidates[]` and explicit `test_selection`, with each candidate input represented by a role plus url/path, sha1, and filetype.

  • workflow-brief-to-galaxy-data-flow

    Optional structured Nextflow source evidence; consult it without treating source implementation as Galaxy design.

  • workflow-brief-to-galaxy-interface

    Optional structured Nextflow source evidence; process, channel, parameter, and test facts are evidence rather than assumed Galaxy design.

  • workflow-brief-to-galaxy-template

    Optional structured Nextflow source evidence; source processes and channels are evidence, not a Galaxy topology mandate.

  • workflow-brief-to-galaxy-test-plan

    Optional structured Nextflow source evidence carrying parameters, tests, fixtures, and expected outputs within the brief's selected scope.

Schemas

Pipelines