nextflow-test-to-cwl-test-plan

Translate Nextflow test evidence into a CWL workflow test plan.

draft source/nextflow target/cwl

Related: summary-nextflow

Mold health

Source layout
Every file beside index.md is one the mold kind declares.
Axis fields
source-specific fields are coherent.
Eval plan
Abstract oracle: the properties any cast of this Mold must satisfy.

eval.md declares properties and check type.
eval.md ↗
Scenarios
Concrete cases bound to fixtures, run against the eval properties.

scenarios.md declares cases bound to fixtures.
scenarios.md ↗
Typed refs
2 typed references; 0 resolver issues.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

axis: source-specific
source: nextflow
name: nextflow-test-to-cwl-test-plan

contract

Reference Loading

Typed references describe what casting consumes, and when the generated skill should load each artifact.

Schema summary-nextflow

Structured contract copied for validation or lookup.

Runtime Upfront Verbatim Corpus Observed

Purpose: Read summarized nf-test profiles, snapshot fixtures, selected test data, params, and expected outputs.

Research nextflow-test-case-selection

Background synthesis loaded by explicit progressive-disclosure metadata.

Runtime On Demand Verbatim Corpus Observed

Purpose: Preserve the selected candidate's scope and keep bootstrap-only, reference-scale, and deferred cases distinct.
Trigger: When the selected case is minimal, tiny, full-scale, stub-only, or accompanied by deferred whole-pipeline candidates.

Cast artifacts

Claude skill nextflow-test-to-cwl-test-plan — Translate Nextflow test evidence into a CWL workflow test plan.

How to install →

Artifact handoffs

/ pipeline contract

Produces

cwl-test-plan markdown cwl-test-plan.md

Reviewable CWL workflow test plan: job inputs, expected outputs, assertions, fixtures, rationale provenance.
consumed by
- implement-cwl-workflow-test

Consumes

summary-nextflow

Structured Nextflow summary from [[summarize-nextflow]]; carries test_candidates, test_selection, and snapshot evidence.
produced by
- summarize-nextflow

nextflow-test-to-cwl-test-plan

Translate Nextflow test evidence into a CWL workflow test plan. This preserves the NEXTFLOW → CWL pipeline after the Galaxy-specific test-plan split; concrete CWL test artifact assembly remains owned by implement-cwl-workflow-test.

Consume the candidate selected by summarize-nextflow rather than choosing a profile again. nextflow-test-case-selection supplies the scope classification and the rule for keeping deferred whole-pipeline candidates visible.

Incoming References (4)

NEXTFLOW → CWL phase of pipeline — Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
Component Nextflow Testing related mold — nf-test patterns mapped to Galaxy planemo asserts and CWL test equivalents — backs the nextflow test-plan Molds and summarize-nextflow §7.
Selecting the first Nextflow test case related mold — A deterministic policy for choosing the first whole-pipeline Nextflow test case without mistaking profile names for coverage.
Nextflow pipeline summary related note — JSON Schema for the structured summary emitted by the summarize-nextflow Mold.