nextflow-test-to-cwl-test-plan

Translate Nextflow test evidence into a CWL workflow test plan.

draft source/nextflow target/cwl

Related: summary-nextflow

Mold health

Source layout
Every file beside index.md is one the mold kind declares.
Axis fields
source-specific fields are coherent.
Eval plan
Abstract oracle: the properties any cast of this Mold must satisfy.

eval.md declares properties and check type.
eval.md ↗
Scenarios
Concrete cases bound to fixtures, run against the eval properties.

scenarios.md declares cases bound to fixtures.
scenarios.md ↗
Typed refs
1 typed reference; 0 resolver issues.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

axis: source-specific
source: nextflow
name: nextflow-test-to-cwl-test-plan

contract

Reference Loading

Typed references describe what casting consumes, and when the generated skill should load each artifact.

Schema summary-nextflow

Structured contract copied for validation or lookup.

Runtime Upfront Verbatim Corpus Observed

Purpose: Read summarized nf-test profiles, snapshot fixtures, selected test data, params, and expected outputs.

Cast artifacts

Claude skill nextflow-test-to-cwl-test-plan — Translate Nextflow test evidence into a CWL workflow test plan.

How to install →

Artifact handoffs

/ pipeline contract

Produces

cwl-test-plan markdown cwl-test-plan.md

Reviewable CWL workflow test plan: job inputs, expected outputs, assertions, fixtures, rationale provenance.
consumed by
- implement-cwl-workflow-test

Consumes

summary-nextflow

Structured Nextflow summary from [[summarize-nextflow]]; carries test_fixtures, nf_tests, snapshot evidence.
produced by
- summarize-nextflow

nextflow-test-to-cwl-test-plan

Translate Nextflow test evidence into a CWL workflow test plan. This preserves the NEXTFLOW → CWL pipeline after the Galaxy-specific test-plan split; concrete CWL test artifact assembly remains owned by implement-cwl-workflow-test.

Incoming References (3)

NEXTFLOW → CWL phase of pipeline — Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
Component Nextflow Testing related mold — nf-test patterns mapped to Galaxy planemo asserts and CWL test equivalents — backs the nextflow test-plan Molds and summarize-nextflow §7.
Nextflow pipeline summary related note — JSON Schema for the structured summary emitted by the summarize-nextflow Mold.