Workflows

These workflows are associated with Visualisation with Circos

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["ℹ️ Input Dataset\nInput dataset"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Remove beginning"];
  2["Remove beginning"];
  3["Select"];
  4["Circos"];
  5["Cut"];
  1 -->|out_file1| 5;
  6["Select random lines"];
  2 -->|out_file1| 6;
  7["Cut"];
  3 -->|out_file1| 7;
  8["Select random lines"];
  5 -->|out_file1| 8;
  9["Circos"];
  0 -->|output| 9;
  7 -->|out_file1| 9;
  10["Circos"];
  0 -->|output| 10;
  7 -->|out_file1| 10;
  11["Circos"];
  0 -->|output| 11;
  7 -->|out_file1| 11;
  8 -->|out_file1| 11;
  12["Circos"];
  0 -->|output| 12;
  7 -->|out_file1| 12;
  8 -->|out_file1| 12;
  13["Circos"];
  0 -->|output| 13;
  7 -->|out_file1| 13;
  8 -->|out_file1| 13;
  14["Circos"];
  0 -->|output| 14;
  7 -->|out_file1| 14;
  8 -->|out_file1| 14;
  15["Circos"];
  0 -->|output| 15;
  7 -->|out_file1| 15;
  8 -->|out_file1| 15;
  6 -->|out_file1| 15;
  16["Circos"];
  0 -->|output| 16;
  7 -->|out_file1| 16;
  8 -->|out_file1| 16;
  6 -->|out_file1| 16;
	

flowchart TD
  0["ℹ️ Input Dataset\nInput dataset"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nInput dataset"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["Circos"];
  0 -->|output| 2;
  1 -->|output| 2;
  1 -->|output| 2;
  1 -->|output| 2;
  3["Circos"];
  0 -->|output| 3;
  1 -->|output| 3;
  1 -->|output| 3;
  1 -->|output| 3;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: