Workflows

These workflows are associated with GO Enrichment Analysis

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

GO Enrichment Workflow

Last updated Jan 15, 2020

Launch in Tutorial Mode
License: None Specified, defaults to CC-BY-4.0
Tests: ❌ Results: Not yet automated

Download Galaxy Workflow.ga Galaxy France Galaxy Europe Galaxy Australia Galaxy Main Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\nGO annotations Drosophila melanogaster"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nGO"];
  style 1 stroke:#2c3143,stroke-width:4px;
  10["Filter"];
  2 -->|output| 10;
  11["GOEnrichment"];
  3 -->|output| 11;
  1 -->|output| 11;
  4 -->|output| 11;
  5 -->|output| 11;
  12["GOEnrichment"];
  3 -->|output| 12;
  1 -->|output| 12;
  4 -->|output| 12;
  5 -->|output| 12;
  13["GOSlimmer"];
  3 -->|output| 13;
  1 -->|output| 13;
  6 -->|output| 13;
  14["GOEnrichment"];
  3 -->|output| 14;
  1 -->|output| 14;
  4 -->|output| 14;
  7 -->|output| 14;
  15["GOEnrichment"];
  3 -->|output| 15;
  1 -->|output| 15;
  4 -->|output| 15;
  8 -->|output| 15;
  16["GOEnrichment"];
  0 -->|output| 16;
  1 -->|output| 16;
  2 -->|output| 16;
  9 -->|out_file1| 16;
  17["GOEnrichment"];
  0 -->|output| 17;
  1 -->|output| 17;
  10 -->|out_file1| 17;
  9 -->|out_file1| 17;
  18["GOEnrichment"];
  13 -->|output| 18;
  6 -->|output| 18;
  4 -->|output| 18;
  5 -->|output| 18;
  2["ℹ️ Input Dataset\ntrapnellPopulation.tab"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["ℹ️ Input Dataset\nGO annotations Mus musculus"];
  style 3 stroke:#2c3143,stroke-width:4px;
  4["ℹ️ Input Dataset\nMouse population"];
  style 4 stroke:#2c3143,stroke-width:4px;
  5["ℹ️ Input Dataset\nMouse diff"];
  style 5 stroke:#2c3143,stroke-width:4px;
  6["ℹ️ Input Dataset\nGO Slim"];
  style 6 stroke:#2c3143,stroke-width:4px;
  7["ℹ️ Input Dataset\nmouseUnderexpressed.txt"];
  style 7 stroke:#2c3143,stroke-width:4px;
  8["ℹ️ Input Dataset\nmouseOverexpressed.txt"];
  style 8 stroke:#2c3143,stroke-width:4px;
  9["Filter"];
  2 -->|output| 9;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: