Workflows
These workflows are associated with Classification in Machine Learning
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
ml_classification
Last updated Apr 30, 2020
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\ntrain_rows.csv"]; style 0 stroke:#2c3143,stroke-width:4px; 1["ℹ️ Input Dataset\ntest_rows_labels.csv"]; style 1 stroke:#2c3143,stroke-width:4px; 10["Generalized linear models"]; 2 -->|output| 10; 4 -->|outfile_fit| 10; 11["Nearest Neighbors Classification"]; 2 -->|output| 11; 5 -->|outfile_fit| 11; 12["Support vector machines SVMs"]; 2 -->|output| 12; 6 -->|outfile_fit| 12; 13["Ensemble methods"]; 2 -->|output| 13; 7 -->|outfile_fit| 13; 14["Hyperparameter Search"]; 0 -->|output| 14; 0 -->|output| 14; 3 -->|outfile| 14; 9 -->|outfile| 14; 15["Plot confusion matrix, precision, recall and ROC and AUC curves"]; 8 -->|out_file1| 15; 10 -->|outfile_predict| 15; 4 -->|outfile_fit| 15; 16["Plot confusion matrix, precision, recall and ROC and AUC curves"]; 1 -->|output| 16; 11 -->|outfile_predict| 16; 5 -->|outfile_fit| 16; 17["Plot confusion matrix, precision, recall and ROC and AUC curves"]; 1 -->|output| 17; 12 -->|outfile_predict| 17; 6 -->|outfile_fit| 17; 18["Plot confusion matrix, precision, recall and ROC and AUC curves"]; 1 -->|output| 18; 13 -->|outfile_predict| 18; 7 -->|outfile_fit| 18; 19["Ensemble methods"]; 2 -->|output| 19; 14 -->|outfile_object| 19; 2["ℹ️ Input Dataset\ntest_rows.csv"]; style 2 stroke:#2c3143,stroke-width:4px; 20["Plot confusion matrix, precision, recall and ROC and AUC curves"]; 1 -->|output| 20; 19 -->|outfile_predict| 20; 14 -->|outfile_object| 20; 3["Pipeline Builder"]; 4["Generalized linear models"]; 0 -->|output| 4; 0 -->|output| 4; 5["Nearest Neighbors Classification"]; 0 -->|output| 5; 0 -->|output| 5; 6["Support vector machines SVMs"]; 0 -->|output| 6; 0 -->|output| 6; 7["Ensemble methods"]; 0 -->|output| 7; 0 -->|output| 7; 8["Remove beginning"]; 1 -->|output| 8; 9["Estimator attributes"]; 3 -->|outfile| 9;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: