Secreted Proteins Via GO Annotation And WoLF PSORT For shCTSB Paper

Last updated Jan 17, 2020

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flowchart TD
  0["ℹ️ Input Dataset\nInput dataset"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nInput dataset"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nInput dataset"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["UniProt"];
  0 -->|output| 3;
  4["Select"];
  1 -->|output| 4;
  5["Get subontology from a given OBO term"];
  2 -->|output| 5;
  6["Get subontology from a given OBO term"];
  2 -->|output| 6;
  7["Get subontology from a given OBO term"];
  2 -->|output| 7;
  8["Get subontology from a given OBO term"];
  2 -->|output| 8;
  9["Get subontology from a given OBO term"];
  2 -->|output| 9;
  10["WoLF PSORT"];
  3 -->|outfile_retrieve_fasta| 10;
  11["Join"];
  0 -->|output| 11;
  4 -->|out_file1| 11;
  12["Get all the term IDs and term names of a given OBO ontology"];
  5 -->|output| 12;
  13["Get all the term IDs and term names of a given OBO ontology"];
  6 -->|output| 13;
  14["Get all the term IDs and term names of a given OBO ontology"];
  7 -->|output| 14;
  15["Get all the term IDs and term names of a given OBO ontology"];
  8 -->|output| 15;
  16["Get all the term IDs and term names of a given OBO ontology"];
  9 -->|output| 16;
  17["Filter"];
  10 -->|tabular_file| 17;
  18["Filter"];
  10 -->|tabular_file| 18;
  19["Join"];
  12 -->|output| 19;
  13 -->|output| 19;
  20["Join"];
  14 -->|output| 20;
  15 -->|output| 20;
  21["Join"];
  17 -->|out_file1| 21;
  18 -->|out_file1| 21;
  22["Join"];
  19 -->|output| 22;
  20 -->|output| 22;
  23["Convert"];
  21 -->|output| 23;
  24["Join"];
  22 -->|output| 24;
  16 -->|output| 24;
  25["Cut"];
  23 -->|out_file1| 25;
  26["Compare two Datasets"];
  11 -->|output| 26;
  24 -->|output| 26;
  27["Unique"];
  26 -->|out_file1| 27;
  28["Cut"];
  27 -->|outfile| 28;
  29["Join"];
  25 -->|output| 29;
  28 -->|output| 29;
  30["Unique"];
  29 -->|output| 30;
  14e0c6dc-436b-4c4c-9292-d5e00cca8c92["Output\nSecretome proteins"];
  30 --> 14e0c6dc-436b-4c4c-9292-d5e00cca8c92;
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