Workflows

These workflows are associated with Metaproteomics tutorial

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Metaproteomics_GTN

Last updated Feb 9, 2021

Launch in Tutorial Mode question
License: None Specified, defaults to CC-BY-4.0
Tests: ❌ Results: Not yet automated

flowchart TD
  0["Input dataset"];
  1["Input dataset collection"];
  2["Input dataset"];
  3["Search GUI"];
  0 -->|output| 3;
  1 -->|output| 3;
  4["Peptide Shaker"];
  3 -->|searchgui_results| 4;
  5["Query Tabular"];
  4 -->|output_psm| 5;
  6["Unipept"];
  5 -->|output| 6;
  7["Unipept"];
  5 -->|output| 7;
  8["Query Tabular"];
  2 -->|output| 8;
  6 -->|output_tsv| 8;
  6 -->|output_tsv| 8;
  4 -->|output_psm| 8;
  9["Query Tabular"];
  4 -->|output_psm| 9;
  7 -->|output_tsv| 9;
  10["SQLite to tabular"];
  8 -->|sqlitedb| 10;
  11["SQLite to tabular"];
  8 -->|sqlitedb| 11;
  12["SQLite to tabular"];
  8 -->|sqlitedb| 12;

	

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: