Workflows
These workflows are associated with Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
| Workflow | Updated | Version | License | Tests | Reports | Comments |
|---|---|---|---|---|---|---|
| Allele-based Pathogen Identification | Jun 20, 2024 | 1 | MIT | ✅ | ✅ | ✅ |
| Gene-based Pathogen Identification | Jun 7, 2024 | 2 | MIT | ✅ | ✅ | ✅ |
| Nanopore Preprocessing | Jul 3, 2025 | 4 | MIT | ✅ | ✅ | ✅ |
| Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation | Jul 3, 2025 | 3 | MIT | ❌ | ✅ | ✅ |
| Taxonomy Profiling and Visualization with Krona | Jun 7, 2024 | 2 | MIT | ✅ | ✅ | ✅ |