Workflows

These workflows are associated with A short introduction to Galaxy

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["ℹ️ Input Dataset\nmutant_R1"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["FastQC"];
  0 -->|output| 1;
  2["Filter by quality"];
  0 -->|output| 2;
  4b3ddca1-6aff-43a5-bef5-dc42fb91dac4["Output\nfilter1"];
  2 --> 4b3ddca1-6aff-43a5-bef5-dc42fb91dac4;
  style 4b3ddca1-6aff-43a5-bef5-dc42fb91dac4 stroke:#2c3143,stroke-width:4px;
  3["Filter by quality"];
  0 -->|output| 3;
  68a090ad-90c0-4b0a-8c23-4538393304d2["Output\nfilter2"];
  3 --> 68a090ad-90c0-4b0a-8c23-4538393304d2;
  style 68a090ad-90c0-4b0a-8c23-4538393304d2 stroke:#2c3143,stroke-width:4px;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: