Workflows

These workflows are associated with A short introduction to Galaxy

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["ℹ️ Input Dataset\nmutant_R1"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["FastQC"];
  0 -->|output| 1;
  2["Filter by quality"];
  0 -->|output| 2;
  3eed232d-39ef-4442-8f7a-52d943ed356b["Output\nfilter1"];
  2 --> 3eed232d-39ef-4442-8f7a-52d943ed356b;
  style 3eed232d-39ef-4442-8f7a-52d943ed356b stroke:#2c3143,stroke-width:4px;
  3["Filter by quality"];
  0 -->|output| 3;
  99c1023c-3181-45cb-9ffd-c8c562d6d1bf["Output\nfilter2"];
  3 --> 99c1023c-3181-45cb-9ffd-c8c562d6d1bf;
  style 99c1023c-3181-45cb-9ffd-c8c562d6d1bf stroke:#2c3143,stroke-width:4px;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: