Workflows

These workflows are associated with Workflow Reports

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["ℹ️ Input Dataset\nIris Dataset"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Convert CSV to tabular"];
  0 -->|output| 1;
  2["Datamash"];
  1 -->|tabular| 2;
  5fc8c705-b9e2-4008-aa85-e84504b8395f["Output\ndatamash_output"];
  2 --> 5fc8c705-b9e2-4008-aa85-e84504b8395f;
  style 5fc8c705-b9e2-4008-aa85-e84504b8395f stroke:#2c3143,stroke-width:4px;
  3["Remove beginning"];
  1 -->|tabular| 3;
  4["Cut"];
  3 -->|out_file1| 4;
  5["Group"];
  3 -->|out_file1| 5;
  7e07839c-e8ca-4692-8b8e-6eb3607066de["Output\ngroup1"];
  5 --> 7e07839c-e8ca-4692-8b8e-6eb3607066de;
  style 7e07839c-e8ca-4692-8b8e-6eb3607066de stroke:#2c3143,stroke-width:4px;
  6["Group"];
  3 -->|out_file1| 6;
  9cb98227-aa5b-4b77-933c-ffba1e98566e["Output\ngroup2"];
  6 --> 9cb98227-aa5b-4b77-933c-ffba1e98566e;
  style 9cb98227-aa5b-4b77-933c-ffba1e98566e stroke:#2c3143,stroke-width:4px;
  7["Scatterplot with ggplot2"];
  3 -->|out_file1| 7;
  8["Scatterplot with ggplot2"];
  3 -->|out_file1| 8;
  9["Unique"];
  4 -->|out_file1| 9;
  fc73409c-7878-4391-bc91-f99a5be0ba06["Output\nunique_output"];
  9 --> fc73409c-7878-4391-bc91-f99a5be0ba06;
  style fc73409c-7878-4391-bc91-f99a5be0ba06 stroke:#2c3143,stroke-width:4px;
	

flowchart TD
  0["ℹ️ Input Dataset\nIris Dataset"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Convert CSV to tabular"];
  0 -->|output| 1;
  2["Datamash"];
  1 -->|tabular| 2;
  5381f9b0-5170-484c-828e-4469ec27ab3e["Output\ndatamash_output"];
  2 --> 5381f9b0-5170-484c-828e-4469ec27ab3e;
  style 5381f9b0-5170-484c-828e-4469ec27ab3e stroke:#2c3143,stroke-width:4px;
  3["Remove beginning"];
  1 -->|tabular| 3;
  4["Cut"];
  3 -->|out_file1| 4;
  5["Group"];
  3 -->|out_file1| 5;
  836a57b3-3657-435b-b396-869af7e2f35e["Output\ngroup1"];
  5 --> 836a57b3-3657-435b-b396-869af7e2f35e;
  style 836a57b3-3657-435b-b396-869af7e2f35e stroke:#2c3143,stroke-width:4px;
  6["Group"];
  3 -->|out_file1| 6;
  82e163a4-8fc5-4b8e-8186-9fc66cd75b1d["Output\ngroup2"];
  6 --> 82e163a4-8fc5-4b8e-8186-9fc66cd75b1d;
  style 82e163a4-8fc5-4b8e-8186-9fc66cd75b1d stroke:#2c3143,stroke-width:4px;
  7["Scatterplot with ggplot2"];
  3 -->|out_file1| 7;
  bbbac6ca-64fb-46ad-8798-6c7c5369ccaf["Output\nSepal Plot (PNG)"];
  7 --> bbbac6ca-64fb-46ad-8798-6c7c5369ccaf;
  style bbbac6ca-64fb-46ad-8798-6c7c5369ccaf stroke:#2c3143,stroke-width:4px;
  8["Scatterplot with ggplot2"];
  3 -->|out_file1| 8;
  74ee0c3c-53c2-44cf-b0e8-2a10c24166c9["Output\nPetal Plot (PNG)"];
  8 --> 74ee0c3c-53c2-44cf-b0e8-2a10c24166c9;
  style 74ee0c3c-53c2-44cf-b0e8-2a10c24166c9 stroke:#2c3143,stroke-width:4px;
  9["Unique"];
  4 -->|out_file1| 9;
  6bcc2f96-255e-48f5-a37b-7d6a2c123493["Output\nIris Species"];
  9 --> 6bcc2f96-255e-48f5-a37b-7d6a2c123493;
  style 6bcc2f96-255e-48f5-a37b-7d6a2c123493 stroke:#2c3143,stroke-width:4px;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: