Workflows

These workflows are associated with Phylogenetics - Back to basics

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Tree Building (imported from uploaded file)

Helena Rasche, Michael Charleston

Last updated May 10, 2024

Launch in Tutorial Mode question
License: MIT
Tests: ✅ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nInput FASTA Sequence File"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["MAFFT"];
  0 -->|output| 1;
  e5d56101-daff-420b-82e9-dc6cc923f7ab["Output\noutputAlignment"];
  1 --> e5d56101-daff-420b-82e9-dc6cc923f7ab;
  style e5d56101-daff-420b-82e9-dc6cc923f7ab stroke:#2c3143,stroke-width:4px;
  2["FASTTREE"];
  1 -->|outputAlignment| 2;
  632ce28d-3086-490e-bd97-949eb2cb385a["Output\noutput"];
  2 --> 632ce28d-3086-490e-bd97-949eb2cb385a;
  style 632ce28d-3086-490e-bd97-949eb2cb385a stroke:#2c3143,stroke-width:4px;
  3["IQ-TREE"];
  1 -->|outputAlignment| 3;
  b8434b2b-2001-4b1a-bd06-faeab18519a4["Output\ntreefile"];
  3 --> b8434b2b-2001-4b1a-bd06-faeab18519a4;
  style b8434b2b-2001-4b1a-bd06-faeab18519a4 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!

Hands-on: Importing a workflow

Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.

Click on galaxy-upload Import at the top-right of the screen

Provide your workflow

Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”

Option 2: Upload the workflow file in the box labelled “Archived Workflow File”

Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL