Workflows

These workflows are associated with Species distribution modeling

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Species Distribution Modeling With Wallace From GBIF - Training Material

Last updated Jan 23, 2020

Launch in Tutorial Mode
License: None Specified, defaults to CC-BY-4.0
Tests: ❌ Results: Not yet automated

Download Galaxy Workflow.ga Galaxy Australia Galaxy France Galaxy Main Galaxy Europe Import to another server (≥23.0+ only!) 
flowchart TD
  0["Get species occurrences data"];
  1["Wallace"];
  2["Cut"];
  0 -->|output| 2;
  3["Filter"];
  2 -->|output| 3;
  4["Convert tabular to CSV"];
  3 -->|out_file1| 4;
  5["Replace"];
  4 -->|csv| 5;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL