These workflows are associated with Unicycler Assembly

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Unicycler training

Last updated Feb 13, 2020

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License: None Specified, defaults to CC-BY-4.0
Tests: ✅ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nForward reads"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nReverse Reads"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nLong Reads"];
  style 2 stroke:#2c3143,stroke-width:4px;
  0 -->|output| 3;
  1 -->|output| 4;
  5["Create assemblies with Unicycler"];
  2 -->|output| 5;
  0 -->|output| 5;
  1 -->|output| 5;
  3 -->|text_file| 6;
  4 -->|text_file| 6;
  5 -->|assembly| 7;
  5 -->|assembly| 8;
  8 --> 0d6b33c9-b105-4997-9045-b86e52f00156;
  style 0d6b33c9-b105-4997-9045-b86e52f00156 stroke:#2c3143,stroke-width:4px;
  8 --> 8e08b54d-87e1-4269-9b96-8ebf1a9bb4ab;
  style 8e08b54d-87e1-4269-9b96-8ebf1a9bb4ab stroke:#2c3143,stroke-width:4px;
  8 --> 65e4ddf9-f5bc-4078-8b4e-37b332e12ece;
  style 65e4ddf9-f5bc-4078-8b4e-37b332e12ece stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: