xcms plot chromatogram: Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)

Metadata

Links

• bio.tools: xcms

EDAM Operations

• Label-free quantification
• Chromatogram visualisation
• Chromatographic alignment
• Peak detection
• Filtering
• Mass spectrum visualisation
• Validation

EDAM Topics

• Bioimaging
• Data visualisation
• Metabolomics

Observed Tool Versions

Within GTN tutorials

3.12.0+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.cz

3.4.4.0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.cz
• UseGalaxy.no

Relevant Tutorials

• Metabolomics / Mass spectrometry: LC-MS analysis
• Metabolomics / Mass spectrometry: LC-MS preprocessing with XCMS