Faster Download and Extract Reads in FASTQ: format from NCBI SRA

toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1

Metadata

Links

bio.tools: SRA Software Toolkit

EDAM Operations

EDAM Topics

Observed Tool Versions

Within GTN tutorials

3.0.8+galaxy1

3.0.3+galaxy0

2.11.0+galaxy0

2.10.9+galaxy0

2.10.8+galaxy0

2.10.7+galaxy1

2.10.4+galaxy1

Relevant Tutorials

Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
Using Galaxy and Managing your Data / SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
Introduction to Galaxy Analyses / NGS data logistics
Transcriptomics / Pathway analysis with the MINERVA Platform
Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis