SnpEff eff:: annotate variants for SARS-CoV-2

Metadata

Links

• bio.tools: snpEff

EDAM Operations

• SNP detection

EDAM Topics

• DNA polymorphism
• Genetic variation
• Nucleic acid sites, features and motifs

Observed Tool Versions

Within GTN tutorials

4.5covid19

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• GalaxyTrakr
• MISSISSIPPI
• UseGalaxy.be
• UseGalaxy.cz
• UseGalaxy.no

Relevant Tutorials

• Using Galaxy and Managing your Data / SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
• Introduction to Galaxy Analyses / NGS data logistics
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis