Scanpy Inspect and manipulate:

Metadata

Links

• bio.tools: SCANPY

EDAM Operations

• Differential gene expression profiling

EDAM Topics

• Gene expression
• Genetics
• Cell biology

Observed Tool Versions

Within GTN tutorials

1.10.2+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

1.9.6+galaxy3

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

1.7.1+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.cz
• UseGalaxy.no

Relevant Tutorials

• Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2
• Single Cell / Removing the effects of the cell cycle
• Single Cell / Analysis of plant scRNA-Seq Data with Scanpy
• Single Cell / Clustering 3K PBMCs with Scanpy