Samtools depth: compute the depth at each position or region

Metadata

Links

• bio.tools: SAMtools

EDAM Operations

• Filtering
• Indexing
• Formatting
• Editing
• Visualisation
• Parsing
• Sorting

EDAM Topics

• Sequencing
• Rare diseases
• Mapping
• Sequence analysis

Observed Tool Versions

Within GTN tutorials

1.15.1+galaxy2

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

Relevant Tutorials

• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition