Samtools coverage: computes the depth at each position or region

Metadata

Links

• bio.tools: SAMtools

EDAM Operations

• Formatting
• Indexing
• Filtering
• Parsing
• Visualisation
• Editing
• Sorting

EDAM Topics

• Mapping
• Sequence analysis
• Rare diseases
• Sequencing

Observed Tool Versions

Within GTN tutorials

1.15.1+galaxy2

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.cz

Relevant Tutorials

• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition