MACS2 callpeak: Call peaks from alignment results

Metadata

Links

• bio.tools: MACS

EDAM Operations

• Enrichment analysis
• Gene regulatory network analysis
• Peak calling

EDAM Topics

• Molecular interactions, pathways and networks
• Transcription factors and regulatory sites
• ChIP-seq

Observed Tool Versions

Within GTN tutorials

2.2.7.1+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@AuBi
• UseGalaxy.cz
• UseGalaxy.no

2.1.1.20160309.6

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.no

2.1.1.20160309.0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be

Relevant Tutorials

• Epigenetics / ATAC-Seq data analysis
• Epigenetics / CUT&RUN data analysis
• Epigenetics / Identification of the binding sites of the Estrogen receptor
• Epigenetics / Formation of the Super-Structures on the Inactive X
• Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• Single Cell / Pre-processing of 10X Single-Cell ATAC-seq Datasets