DESeq2: Determines differentially expressed features from count tables

Metadata

Links

• bio.tools: DESeq2

EDAM Operations

• RNA-Seq quantification

EDAM Topics

• Transcriptomics

Observed Tool Versions

Within GTN tutorials

2.11.40.8+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@AuBi
• MISSISSIPPI
• UseGalaxy.cz

2.11.40.6

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@AuBi
• GalaxyTrakr
• UseGalaxy.be

2.11.40.6+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• GalaxyTrakr
• UseGalaxy.be
• UseGalaxy.no

2.11.40.2

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.be

2.11.39

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be

Relevant Tutorials

• Transcriptomics / De novo transcriptome reconstruction with RNA-Seq
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Network analysis with Heinz
• Transcriptomics / Reference-based RNA-Seq data analysis
• Transcriptomics / Differential abundance testing of small RNAs