Bracken: to re-estimate abundance at a taxonomic level from kraken output

Metadata

Links

• bio.tools: Bracken

EDAM Operations

• Statistical calculation

EDAM Topics

• Metagenomics
• Microbial ecology

Observed Tool Versions

Within GTN tutorials

2.9+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

2.8+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.cz

2.7+galaxy1

• UseGalaxy.eu ⭐️

Relevant Tutorials

• Ecology / Checking expected species and contamination in bacterial isolate
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data