MSstatsTMT: protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Metadata

Links

• bio.tools: MSstats

EDAM Operations

• Heat map generation
• Statistical inference
• Quantification
• Statistical modelling
• Differential protein expression profiling
• Standardisation and normalisation
• Data handling
• Plotting
• Formatting

EDAM Topics

• Proteomics experiment
• Statistics and probability
• Workflows
• Proteomics

Observed Tool Versions

Within GTN tutorials

2.0.0+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.cz

2.0.0+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.org.au ⭐️

Relevant Tutorials

• Microbiome / Clinical Metaproteomics 5: Data Interpretation
• Proteomics / Clinical Metaproteomics 5: Data Interpretation
• Proteomics / MaxQuant and MSstats for the analysis of TMT data