MSstats: statistical relative protein significance analysis in DDA, SRM and DIA Mass Spectrometry

Metadata

Links

• bio.tools: MSstats

EDAM Operations

• Quantification
• Statistical modelling
• Formatting
• Differential protein expression profiling
• Standardisation and normalisation
• Data handling
• Heat map generation
• Plotting
• Statistical inference

EDAM Topics

• Proteomics experiment
• Statistics and probability
• Workflows
• Proteomics

Observed Tool Versions

Within GTN tutorials

4.0.0.0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

3.22.0.1

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

3.20.1.0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• Galaxy@AuBi
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Proteomics / Statistical analysis of DIA data
• Proteomics / Label-free data analysis using MaxQuant
• Proteomics / MaxQuant and MSstats for the analysis of label-free data