Scanpy FilterCells: based on counts and numbers of genes expressed

Metadata

Links

• bio.tools: SCANPY

EDAM Operations

• Differential gene expression profiling

EDAM Topics

• Genetics
• Cell biology
• Gene expression

Observed Tool Versions

Within GTN tutorials

1.9.3+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

1.8.1+galaxy93

• UseGalaxy.eu ⭐️

1.8.1+galaxy9

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

1.8.1+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.org.au ⭐️

Relevant Tutorials

• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy
• Single Cell / Converting between common single cell data formats
• Single Cell / Converting NCBI Data to the AnnData Format