BamLeftAlign: indels in BAM datasets

Metadata

Links

• bio.tools: FreeBayes

EDAM Operations

• Statistical calculation
• Variant calling

EDAM Topics

• Rare diseases
• Genomics
• Genetic variation

Observed Tool Versions

Within GTN tutorials

1.3.8

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

1.3.6

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@Pasteur
• MISSISSIPPI
• UseGalaxy.cz
• UseGalaxy.no

1.3.1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• GalaxyTrakr
• UseGalaxy.be
• UseGalaxy.no

1.1.0.46-0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Variant Analysis / Calling very rare variants
• Variant Analysis / Calling variants in non-diploid systems
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
• Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs