Salmon quant: Perform dual-phase, reads or mapping-based estimation of transcript abundance from RNA-seq reads

Metadata

Links

• bio.tools: Salmon

EDAM Operations

• RNA-Seq quantification
• Sequence composition calculation
• Expression analysis

EDAM Topics

• Transcriptomics
• RNA-Seq
• Gene expression

Observed Tool Versions

Within GTN tutorials

0.14.1.2+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.no

0.8.2

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be

Relevant Tutorials

• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Differential abundance testing of small RNAs