Salmon quant: Perform dual-phase, reads or mapping-based estimation of transcript abundance from RNA-seq reads

Metadata

Links

• bio.tools: Salmon

EDAM Operations

• Sequence composition calculation
• RNA-Seq quantification
• Expression analysis

EDAM Topics

• RNA-Seq
• Transcriptomics
• Gene expression

Observed Tool Versions

Within GTN tutorials

1.10.1+galaxy2

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@Pasteur
• GalaxyTrakr
• MISSISSIPPI
• UseGalaxy.be
• UseGalaxy.cz

0.8.2

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be

Relevant Tutorials

• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Differential abundance testing of small RNAs