hicPlotMatrix: plot a Hi-C contact matrix heatmap

Metadata

Links

• bio.tools: HiCExplorer

EDAM Operations

• Visualisation
• Validation
• Standardisation and normalisation

EDAM Topics

• Chromosome conformation capture
• DNA
• ChIP-seq
• Workflows
• Epigenetics

Observed Tool Versions

Within GTN tutorials

3.7.6+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.cz

3.4.3.0

• UseGalaxy.eu ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer