When can you use (or cannot use) Match between runs in MaxQuant?

Authors:

No golden rule here. For quantitative comparison of different sample groups it can be valuable to use MBR to increase the number of identified + quantified proteins in all samples and then have more proteins that occur in most of the samples to compare them.

Persistent URL

Resource PURL: https://gxy.io/GTN:F00287

Still have questions?

Gitter Chat Support

Galaxy Help Forum

Want to embed this snippet (FAQ) in your GTN Tutorial?

{% snippet  topics/proteomics/tutorials/maxquant-msstats-dda-lfq/faqs/match.md %}

See other uses

Search on GitHub (must be logged in)